WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198782 Gene Name  C39F7.7
Sequence Name  ? C39F7.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including hrpr-1; ogt-1; and eat-2 based on RNA-seq and microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 52
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198782

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C39F7.7 C39F7.7 52   V: 1264510-1264561
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk963591
gk963553
gk964259
gk963850
gk963899
gk963027
WBVar02124718
gk626164
gk874220

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198782 1264510 1264561 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_1264562..1264772   211 V: 1264562-1264772 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genomic locations differentially bound by CAMT-1 identified using the DiffBind algorithm for ChIP-seq data with a false discovery rate (FDR) threshold of 0.05. RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. WBPaper00061902:CAMT-1_interacting
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_upregulated
  Genes that showed significantly increased expression in hrp-2(RNAi) animals comparing to in control animals. DESeq2, adjusted p-value < 0.1, log2 Fold change >= 2 or <= -2. WBPaper00050504:hrp-2(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198782 1264510 1264561 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
52

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_1263990..1264509   520 V: 1263990-1264509 Caenorhabditis elegans