WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00255732 Gene Name  srlf-22
Sequence Name  ? T02B11.12 Organism  Caenorhabditis elegans
Automated Description  Is predicted to encode a protein with the following domains: SXP/RAL-2 family protein Ani s 5-like, metal-binding domain; SXP/RAL-2 family protein Ani s 5-like, cation-binding domain; and SXP/RAL-2-related. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 797
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00255732

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T02B11.12.1 T02B11.12.1 711   V: 891135-891931
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02B11.12 T02B11.12 711   V: 891135-891554

0 RNAi Result

34 Allele

Public Name
WBVar01584378
WBVar01584379
gk963591
gk963553
gk964259
gk963850
gk963027
gk963889
gk962552
gk962551
WBVar02120514
WBVar01609863
WBVar01609864
WBVar01609861
WBVar01609862
WBVar01609860
WBVar01520789
WBVar01520788
WBVar01520790
WBVar01520792
WBVar01520791
WBVar01520794
WBVar01520793
gk472786
gk319631
gk417608
gk812236
gk727454
gk771108
gk473768

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00255732 891135 891931 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_891932..892691   760 V: 891932-892691 Caenorhabditis elegans

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr2023943 Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans).  
    Expr2005729 Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans).  

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00255732 891135 891931 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
797

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_890524..891134   611 V: 890524-891134 Caenorhabditis elegans