WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00255731 Gene Name  srlf-21
Sequence Name  ? T02B11.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by nas-38 and ogt-1 based on RNA-seq studies. Is predicted to encode a protein with the following domains: SXP/RAL-2 family protein Ani s 5-like, metal-binding domain; SXP/RAL-2 family protein Ani s 5-like, cation-binding domain; and SXP/RAL-2-related. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 810
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00255731

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T02B11.11.1 T02B11.11.1 720   V: 889714-890523
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02B11.11 T02B11.11 720   V: 889714-889821

0 RNAi Result

37 Allele

Public Name
WBVar01584372
WBVar01584373
WBVar01584374
gk963591
gk963553
gk964259
gk963850
gk963027
gk963889
gk962552
gk962551
WBVar02120514
WBVar01609858
WBVar01609859
WBVar01609857
WBVar00202076
WBVar01774428
WBVar01774427
WBVar01774426
WBVar01737582
WBVar01520774
WBVar01520773
WBVar01520776
WBVar01520775
WBVar01520770
WBVar01520772
WBVar01520771
gk567013
gk631800
gk749937

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00255731 889714 890523 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_889317..889713   397 V: 889317-889713 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in nas-38(ok3407) comparing to in N2. A feature was classified upregulated if its FDR-corrected p-value was <= 0.05 and fold change was >= 2. Analogously, a gene was classified downregulated if its FDR-corrected p-value was <= 0.05 and fold change was <= -2. WBPaper00060703:nas-38(ok3407)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00255731 889714 890523 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
810

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_890524..891134   611 V: 890524-891134 Caenorhabditis elegans