WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235188 Gene Name  K09C6.12
Sequence Name  ? K09C6.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by mett-10 based on RNA-seq studies. Biotype  SO:0001268
Genetic Position  :± Length (nt)  ? 102
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00235188

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K09C6.12 K09C6.12 102   V: 859091-859192
 

Other

0 CDSs

7 RNAi Result

WormBase ID
WBRNAi00007464
WBRNAi00051485
WBRNAi00051486
WBRNAi00016869
WBRNAi00018433
WBRNAi00006782
WBRNAi00006930

12 Allele

Public Name
gk963591
gk963553
gk964259
gk963850
gk963027
gk963889
gk962552
gk962551
WBVar02120514
tm4862
WBVar01737574
gk538201

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00235188 859091 859192 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates. DESeq2, p-value < 0.05, fold change > 2. WBPaper00061357:mett-10(ok2204)_downregulated_OP50
  Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates. DESeq2, p-value < 0.05, fold change > 2. WBPaper00061357:mett-10(ok2204)_downregulated_NA22

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00235188 859091 859192 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
102

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region