WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005600 Gene Name  srj-12
Sequence Name  ? R11G11.4 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 and wdr-23 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :-19.981± Length (nt)  ? 1281
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005600

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

71 Allele

Public Name
gk963591
gk964259
gk963850
gk963027
gk963889
gk962552
gk962551
WBVar02122151
WBVar02124605
gk963767
gk963768
WBVar02123844
WBVar02122634
WBVar01970503
WBVar02121233
WBVar02120511
WBVar00200894
WBVar00200895
WBVar00200891
WBVar00200892
WBVar00200893
WBVar02122833
WBVar01583500
WBVar02072483
WBVar01583499
WBVar01583498
WBVar01583497
WBVar01583496
WBVar01583495
WBVar01583508

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00005600 529277 530557 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_530558..530798   241 V: 530558-530798 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in wdr-23(mac32) embryos from parents fed with E. coliHB101, comparing to N2 embryos parents fed with E. coli HB101. DESeq2, Fold Change > 2 or < 0.5. WBPaper00059566:wdr-23(mac32)_upregulated
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_9
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00005600 529277 530557 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1281

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_528870..529276   407 V: 528870-529276 Caenorhabditis elegans