WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219773 Gene Name  linc-32
Sequence Name  ? ZK6.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including ilc-17.1; ogt-1; and meg-4 based on microarray and RNA-seq studies. Biotype  SO:0001641
Genetic Position  V :-19.9968± Length (nt)  ? 342
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219773

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:ZK6.12 ZK6.12 131   V: 410589-410930
 

Other

0 CDSs

0 RNAi Result

25 Allele

Public Name
gk963591
gk963850
gk963027
WBVar02121626
gk963889
gk962551
WBVar01970479
gk509092
WBVar00200778
WBVar00200777
WBVar00200780
WBVar00200779
WBVar02031500
WBVar01517055
WBVar02120511
WBVar01517056
WBVar01517053
WBVar01517054
WBVar01517051
WBVar01517052
WBVar02082428
WBVar01773434
WBVar02082427
WBVar01773435
WBVar02122832

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219773 410589 410930 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_410081..410588   508 V: 410081-410588 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Genes with small RNAs downregulated in all four meg-3(ax3055) meg-4(ax3052) strains comparing to N2 DESeq2 WBPaper00057162:meg-3_meg-4_downregulated_sRNA
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219773 410589 410930 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
342

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_410931..411781   851 V: 410931-411781 Caenorhabditis elegans