WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005434 Gene Name  srh-224
Sequence Name  ? C35D6.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by sir-2.1 based on microarray studies. Is affected by rifampin and allantoin based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  IV :15.0472 ±0.002776 Length (nt)  ? 3818
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005434

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

32 Allele

Public Name
gk964078
gk964500
gk962765
gk963378
gk963590
gk963377
gk963795
gk963704
gk962529
gk963948
gk963888
WBVar02123836
WBVar02121229
WBVar02123109
WBVar02123691
WBVar02124716
WBVar02124220
WBVar02122633
WBVar02121890
WBVar02124488
WBVar00091102
WBVar02124124
WBVar02124031
WBVar01821828
WBVar01658983
gk221464
WBVar01772309
WBVar02056074
WBVar01798854
gk336614

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00005434 16341625 16345442 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_16345443..16346304   862 IV: 16345443-16346304 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:Rifampicin-Allantoin_upregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_18
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00005434 16341625 16345442 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
3818

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_16341375..16341624   250 IV: 16341375-16341624 Caenorhabditis elegans