WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00172690 Gene Name  21ur-9229
Sequence Name  ? Y73F8A.998 Organism  Caenorhabditis elegans
Automated Description  Is affected by lag-1 based on RNA-seq studies. Biotype  SO:0001638
Genetic Position  IV :13.9425± Length (nt)  ? 21
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00172690

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y73F8A.998 Y73F8A.998 21   IV: 15409826-15409846
 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk964078
gk964500
gk962765
gk963378
gk963590
gk963377
gk963795
gk963948
WBVar02124024
WBVar02123831

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00172690 15409826 15409846 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_15409847..15410054   208 IV: 15409847-15410054 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts interacting with LAG-1 at L4 larva stage in germline ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_germline
  Transcripts interacting with LAG-1 at L4 larva stage in whole animal ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_WholeAnimal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00172690 15409826 15409846 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
21

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_15408810..15409825   1016 IV: 15408810-15409825 Caenorhabditis elegans