WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196400 Gene Name  Y73F8A.1164
Sequence Name  ? Y73F8A.1164 Organism  Caenorhabditis elegans
Automated Description  Is affected by rpc-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 96
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196400

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y73F8A.1164 Y73F8A.1164 96   IV: 15318466-15318561
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk964078
gk964500
gk962765
gk963378
gk963590
gk963377
gk963795
gk963948
WBVar02038077
tm11279
gk963961
gk961128

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196400 15318466 15318561 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Small RNAs (less than 200 bases long) that showed significantly increased expression in rpc-1(RNAi) animals. DESeq2, fold change > 2, FDR < 0.05. WBPaper00067416:rpc-1(RNAi)_upregulated_smallRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196400 15318466 15318561 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
96

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_15318222..15318465   244 IV: 15318222-15318465 Caenorhabditis elegans