Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y41E3.107 | Y41E3.107 |
21
 |
IV: 14961931-14961951 |
Other
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00047857 | 14961931 | 14961951 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_14961952..14962019 | 68 | IV: 14961952-14962019 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. | DESEQ2, fold change > 2 and FDR < 0.01. | WBPaper00062103:neuron_enriched | |
| Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure. | Small RNAs (21-26nt) that showed significantly decreased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours. | DESeq2, FDR < 0.05 | WBPaper00056868:P.aeruginosa_downregulated_smallRNA |
| Heat Shock: 35C 4 hours at L4 larva stage. | piRNAs that showed significantly decreased expression after L4 larva N2 animals were heat stressed at 35C for 4 hours | DESeq2 | WBPaper00057154:HeatShock_downregulated_piRNA |
| Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates. | DESeq2, p-value < 0.05, fold change > 2. | WBPaper00061357:mett-10(ok2204)_upregulated_OP50 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_14961841..14961930 | 90 | IV: 14961841-14961930 | Caenorhabditis elegans |
