Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y57G11C.1131.1 | Y57G11C.1131.1 |
558
 |
IV: 14932972-14933624 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y57G11C.1131 | Y57G11C.1131 |
177
|
IV: 14933384-14933427 |
21 Allele
| Public Name |
|---|
| gk964078 |
| gk963546 |
| gk963547 |
| gk964500 |
| gk962765 |
| gk963590 |
| gk963795 |
| gk963948 |
| WBVar02123398 |
| WBVar02124710 |
| WBVar01797756 |
| WBVar02124363 |
| WBVar02077821 |
| gk219084 |
| WBVar02124022 |
| WBVar00576811 |
| WBVar02037966 |
| WBVar01968585 |
| WBVar02122623 |
| WBVar00196151 |
| gk508655 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00194661 | 14932972 | 14933624 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_14933625..14934293 | 669 | IV: 14933625-14934293 | Caenorhabditis elegans |
10 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in eat-2(ad465);dve-1(RNAi) animals comparing to eat-2(ad465) animals injected with empty vector. | fold change > 2, FDR < 0.01 | WBPaper00067391:dve-1(RNAi)_upregulated_eat-2(ad465) | |
| Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. | DESeq v1.6.3. Fold change > 1.5. | WBPaper00050370:dpy-21(e428)_L3_upregulated | |
| Transcripts that showed significantly increased expression in cfp-1(tm6369) comparing to in N2 at early embryo stage. | DESeq2, FDR < 0.05 | WBPaper00058691:cfp-1(tm6369)_upregulated | |
| Transcripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2 at early embryo stage. | DESeq2, FDR < 0.05 | WBPaper00058691:sin-3(tm1276)_upregulated | |
| Top 300 transcripts enriched in intestine according to single cell RNAseq. | Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. | WBPaper00061340:Intestine | |
| Transcripts that showed significantly increased expression in csr-1(RNAi) comparing to in N2 animals fed wth empty vector. | DESeq2 v1.20.0,, fold change > 2, FDR < 0.05. | WBPaper00066919:csr-1(RNAi)_upregulated | |
| Transcripts that showed significantly increased expression in hlh-26(ok1453) animals exposed to E. faecium for 8 hours, comparing to N2 animals exposed to E. faecium for 8 hours. | Fold change > 2. | WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium | |
| Transcripts that showed significantly decreased expression after 24 hours of induction of human beta Amyloid at young adult stage | A 2-fold change in expression level and a false discovery rate analog of p < 0.05. | WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA | |
| Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. | Student's t-test, fold change > 2, p-value < 0.05. | WBPaper00055386:daf-2(e1370)_downregulated | |
| Transcripts that showed significantly decreased expression in mrps-5(RNAi) comparing to in control animals. | Fold change > 4, p-value < 0.01 | WBPaper00056330:mrps-5(RNAi)_downregulated |
3 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr2026288 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). | |||
| Expr2008049 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). | |||
| Expr1161093 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_14932541..14932971 | 431 | IV: 14932541-14932971 | Caenorhabditis elegans |
