WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014925 Gene Name  Y57G11C.29
Sequence Name  ? Y57G11C.29 Organism  Caenorhabditis elegans
Automated Description  Enriched in GLRL and GLRVL based on single-cell RNA-seq studies. Is affected by ints-5 and flcn-1 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1565
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014925

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

58 Allele

Public Name
gk964078
gk963546
gk963547
gk964500
gk962765
gk963590
gk963795
gk963948
WBVar02123398
WBVar02124710
WBVar02124363
WBVar02124022
WBVar02122623
gk964285
WBVar02124020
WBVar01806364
WBVar02078565
gk868118
WBVar02037963
WBVar01732910
WBVar02021993
WBVar01968581
WBVar02021994
gk947104
gk537652
gk455001
gk376685
gk642200
gk936266
gk443003

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014925 14927059 14928623 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14928624..14928778   155 IV: 14928624-14928778 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ints-5(RNAi) comparing to in N2. DESeq2 and edgeR. WBPaper00056284:ints-5(RNAi)_upregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Transcripts that showed significantly increased expression in RB1035[flcn-1(ok975)] comparing to in N2 at young adult stage. Agilent microarray raw data were processed and quantile normalized with the marray package from the Bioconductor project. Fold change statistics and Students t-test were used to create lists of candidates for differential gene expression. WBPaper00042236:flcn-1(ok975)_upregulated
  Single-cell RNA-Seq cell group 23_0 expressed in mesoderm. scVI 0.6.0 WBPaper00065841:23_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014925 14927059 14928623 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1565

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14926754..14927058   305 IV: 14926754-14927058 Caenorhabditis elegans