Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y57G11C.104 | Y57G11C.104 |
21
 |
IV: 14910568-14910588 |
Other
10 Allele
| Public Name |
|---|
| gk964078 |
| gk963546 |
| gk963547 |
| gk964500 |
| gk962765 |
| gk963590 |
| gk963795 |
| gk963948 |
| gk964285 |
| gk964286 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00046222 | 14910568 | 14910588 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_14910380..14910567 | 188 | IV: 14910380-14910567 | Caenorhabditis elegans |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. | Transcripts that showed significantly decreased expression in shk-1(yum1003) animals infected by bacteria strain Vibrio cholerae A1552. | DESeq2 v1.36.0, fold change > 2, FDR < 0.05. | WBPaper00067803:V.cholerae_downregulated_shk-1(yum1003) |
| Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure. | Small RNAs (21-26nt) that showed significantly decreased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours. | DESeq2, FDR < 0.05 | WBPaper00056868:P.aeruginosa_downregulated_smallRNA |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_14910589..14911784 | 1196 | IV: 14910589-14911784 | Caenorhabditis elegans |
