WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00220185 Gene Name  Y57G11C.1145
Sequence Name  ? Y57G11C.1145 Organism  Caenorhabditis elegans
Automated Description  Is affected by lag-1 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 95
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00220185

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y57G11C.1145 Y57G11C.1145 95   IV: 14780839-14780933
 

Other

0 CDSs

0 RNAi Result

15 Allele

Public Name
gk964078
gk963546
gk963547
gk964500
gk962765
gk963590
gk963795
gk963948
WBVar02123255
WBVar02123256
WBVar02122621
WBVar02124802
gk964476
WBVar02123105
WBVar01806272

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00220185 14780839 14780933 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14780934..14780939   6 IV: 14780934-14780939 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly increased expression after 24 hours of infection by Pseudomonas donghuensis HYS, comparing to control animals exposed to OP50. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:HYS_vs_OP50_upregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly decreased expression after 24 hours of infection by Pseudomonas donghuensis HYS with deletion of ferric uptake regulator (FUR), comparing to control animals exposed to HYS. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:FUR_vs_HYS_downregulated
  Transcripts interacting with LAG-1 at L4 larva stage in germline ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_germline
  Transcripts interacting with LAG-1 at L4 larva stage in whole animal ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_WholeAnimal
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure. Small RNAs (21-26nt) that showed significantly decreased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours. DESeq2, FDR < 0.05 WBPaper00056868:P.aeruginosa_downregulated_smallRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00220185 14780839 14780933 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
95

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14780691..14780838   148 IV: 14780691-14780838 Caenorhabditis elegans