WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00050197 Gene Name  21ur-39
Sequence Name  ? Y37A1B.137 Organism  Caenorhabditis elegans
Automated Description  Is affected by mab-5 based on RNA-seq studies. Biotype  SO:0001638
Genetic Position  IV :11.187± Length (nt)  ? 21
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00050197

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y37A1B.137 Y37A1B.137 21   IV: 14035577-14035597
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964078
gk963546
gk963547
gk964500
gk962765
gk964111
gk964110
gk962794

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00050197 14035577 14035597 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14035598..14035626   29 IV: 14035598-14035626 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals. DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. WBPaper00066652:mab-5(e1239)_upregulated_Q-cell

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00050197 14035577 14035597 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
21

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14035222..14035576   355 IV: 14035222-14035576 Caenorhabditis elegans