WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00047916 Gene Name  21ur-2841
Sequence Name  ? Y37A1B.84 Organism  Caenorhabditis elegans
Automated Description  Is affected by mab-5 based on RNA-seq studies. Biotype  SO:0001638
Genetic Position  IV :11.1827 ±0.004064 Length (nt)  ? 21
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00047916

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y37A1B.84 Y37A1B.84 21   IV: 14035201-14035221
 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk964078
gk963546
gk963547
gk964500
gk962765
gk964111
gk964110
gk962794
gk700189
gk217508

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00047916 14035201 14035221 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14035222..14035576   355 IV: 14035222-14035576 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure. Small RNAs (21-26nt) that showed significantly increased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours. DESeq2, FDR < 0.05 WBPaper00056868:P.aeruginosa_upregulated_smallRNA
  piRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine). DESeq2 v1.13.8, fold change > 2, FDR < 0.01. WBPaper00056161:male_enriched_piRNA
  Transcripts that showed significantly increased expression in Q cells isolated from mab-5(gk670) animals, comparing to Q cells isolated from N2 animals. DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. WBPaper00066652:mab-5(gk670)_upregulated_Q-cell
  Transcripts that showed significantly increased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals. DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. WBPaper00066652:mab-5(e1239)_upregulated_Q-cell

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00047916 14035201 14035221 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
21

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_14034108..14035200   1093 IV: 14034108-14035200 Caenorhabditis elegans