WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00048335 Gene Name  21ur-2202
Sequence Name  ? C08F11.42 Organism  Caenorhabditis elegans
Biotype  SO:0001638 Genetic Position  IV :10.5352±
Length (nt)  ? 21
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00048335

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C08F11.42 C08F11.42 21   IV: 13639040-13639060
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964078
gk963546
gk963547
gk964500
gk962765
gk964111
gk964110
tm11353

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00048335 13639040 13639060 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Hypoxia: 0.5% oxygen 2 hours. Transcripts that showed significantly increased expression after hypoxia in an egl-9 / hif-1 independent manner. DESeq2 p-value <0.05, expression of hypoxia vs. normxia >= 2, expression in egl09(sa307) vs N2 < 2, expression of egl-9(sa307); hif-1(ia04) vs N2 <= 2. WBPaper00055344:hypoxia_regulated_HIF-1_independent

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00048335 13639040 13639060 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
21

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_13638667..13639039   373 IV: 13638667-13639039 Caenorhabditis elegans