WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00194945 Gene Name  C32H11.16
Sequence Name  ? C32H11.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21; daf-2; and ogt-1 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 443
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00194945

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

20 Allele

Public Name
gk964278
gk964078
gk963546
gk963547
gk964500
gk962765
WBVar00091023
gk681706
gk697693
gk354936
gk583106
gk776518
WBVar02121035
WBVar01454791
WBVar02123250
gk215513
WBVar02124214
WBVar02078382
WBVar02123100
gk963321

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00194945 12927683 12928125 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_12927413..12927682   270 IV: 12927413-12927682 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00194945 12927683 12928125 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
443

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_12928126..12930888   2763 IV: 12928126-12930888 Caenorhabditis elegans