WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42C1.4c.1 Sequence Name  C42C1.4c.1
Length (nt)  3369   Chromosome Location  IV: 12270690-12274827
Chromosome . Primary Identifier  IV Chromosome Location . Start  12270690
Chromosome Location . End  12274827 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42C1.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016582 vps-8 C42C1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42C1.4c C42C1.4c 3369   IV: 12270690-12270870

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C42C1.4c.1 12270690 12274827 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146965   181   IV: 12270690-12270870 Caenorhabditis elegans
Exon146968   125   IV: 12270920-12271044 Caenorhabditis elegans
Exon146970   82   IV: 12271384-12271465 Caenorhabditis elegans
Exon146972   256   IV: 12271517-12271772 Caenorhabditis elegans
Exon146974   469   IV: 12271831-12272299 Caenorhabditis elegans
Exon146976   426   IV: 12272344-12272769 Caenorhabditis elegans
Exon146978   342   IV: 12272826-12273167 Caenorhabditis elegans
Exon146980   909   IV: 12273225-12274133 Caenorhabditis elegans
Exon146982   501   IV: 12274197-12274697 Caenorhabditis elegans
Exon146983   78   IV: 12274750-12274827 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C42C1.4c.1 12270690 12274827 -1

1 Sequence

Length
3369

1 Sequence Ontology Term

Identifier Name Description
transcript