WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195805 Gene Name  F35G2.8
Sequence Name  ? F35G2.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by cep-1 and ogt-1 based on RNA-seq studies. Is affected by 4-bromodiphenyl ether and Oligosaccharides based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 145
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195805

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F35G2.8 F35G2.8 145   IV: 12201131-12201275
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk964475
gk964320
WBVar02122961
h13429
gk615688

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195805 12201131 12201275 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_12201276..12201571   296 IV: 12201276-12201571 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression after four-day-old young adult worms were placed on NGM plates seeded with OP50 in the presence 5% Agaro-oligosaccharides(AGO) for 24 h, comparing to animals grown in the absence of AGO. Fold change > 2. WBPaper00064306:Agaro-oligosaccharides_upregulated
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal
  Transcripts that showed significantly decreased expression after 8 hour exposure to 10ug per ml or 30ug per ml 4-bromodiphenyl ether (BDE-3) at L4 larva stage. t-test, fold change >= 2, p-value < 0.05. WBPaper00051021:4-bromodiphenyl-ether_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195805 12201131 12201275 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
145

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region