WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219577 Gene Name  linc-119
Sequence Name  ? F01G10.21 Organism  Caenorhabditis elegans
Automated Description  Is affected by ins-11 and pabp-2 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  IV :4.56262± Length (nt)  ? 1142
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219577

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F01G10.21 F01G10.21 1142   IV: 10235539-10236680
 

Other

0 CDSs

0 RNAi Result

19 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
tm11610
WBVar00191685
h4056
WBVar00191686
WBVar00191683
WBVar00191684
gk210450
gk890132
gk794163
gk665715
gk399359
WBVar02010795
gk860108
gk698183
ttTi27005

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219577 10235539 10236680 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed signifcantly increased expression in pabp-2(RNAi) animals comparing to in N2 animals injected with empty vector at L1 larva stage and collected at L4 larva stage. FDR < 0.05, fold change > 2 WBPaper00067368:pabp-2(RNAi)_upregulated_N2
  Transcripts that showed significantly decreased expression in ins-11(tm1053) young adult animals comparing to in N2. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18. 75th percentile were defined as down-regulated. WBPaper00053664:ins-11(tm1053)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219577 10235539 10236680 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1142

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_10235330..10235538   209 IV: 10235330-10235538 Caenorhabditis elegans