WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201219 Gene Name  W08D2.13
Sequence Name  ? W08D2.13 Organism  Caenorhabditis elegans
Automated Description  Enriched in M.vrpaapap; anal depressor muscle; anal sphincter muscle; and mu_int_L based on single-cell RNA-seq studies. Is affected by klf-1 and etr-1 based on RNA-seq studies. Is affected by Oligosaccharides based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 148
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201219

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W08D2.13 W08D2.13 148   IV: 9816163-9816310
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk963883
gk963884
gk964226
gk964227
WBVar00191587
gk209644
gk685629
gk596696

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201219 9816163 9816310 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_9815537..9816162   626 IV: 9815537-9816162 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression after four-day-old young adult worms were placed on NGM plates seeded with OP50 in the presence 5% Agaro-oligosaccharides(AGO) for 24 h, comparing to animals grown in the absence of AGO. Fold change > 2. WBPaper00064306:Agaro-oligosaccharides_upregulated
  Genes which expression is changed in isp-1;ctb-1 mutant and is not affected by developmental klf-1 RNAi, but is brought to wild type levels by klf-1 RNAi in adulthood. N.A. WBPaper00059194:klf-1(RNAi)_regulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
  Single-cell RNA-Seq cell group 38_0 expressed in muscle. scVI 0.6.0 WBPaper00065841:38_0
  Single-cell RNA-Seq cell group 102_0 expressed in muscle. scVI 0.6.0 WBPaper00065841:102_0
  Single-cell RNA-Seq cell group 38_2 expressed in muscle. scVI 0.6.0 WBPaper00065841:38_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201219 9816163 9816310 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
148

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_9816311..9817411   1101 IV: 9816311-9817411 Caenorhabditis elegans