WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014689 Gene Name  C28D4.11
Sequence Name  ? C28D4.11 Organism  Caenorhabditis elegans
Automated Description  Enriched in M5 neuron based on single-cell RNA-seq studies. Is affected by daf-16 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1111
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014689

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

25 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk963883
gk963884
gk962573
gk962574
gk960467
gk961659
WBVar01856201
WBVar01856200
WBVar01856199
WBVar01856198
tm12574
gk435507
gk732377
gk348507
gk209527
gk896774
gk209528
gk341675
gk900575
gk591718
gk404793

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014689 9748815 9749925 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_9749926..9752104   2179 IV: 9749926-9752104 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in daf-16(mgDf50) comparing to in N2 at L1 larva stage. DESeq v1.20.0 was used to analyze differential gene expression. Transcripts with adjusted p-value < 0.05 were considered differentialled expressed. WBPaper00048971:daf-16(mgDf50)_downregulated_L1
Fungi infection: Fusarium oxysporum Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. WBPaper00053368:F.oxysporum_regulated
  Single-cell RNA-Seq cell group 96_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:96_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014689 9748815 9749925 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1111

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_9748443..9748814   372 IV: 9748443-9748814 Caenorhabditis elegans