WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201761 Gene Name  F42A9.14
Sequence Name  ? F42A9.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1 and adr-2 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 87
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201761

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F42A9.14 F42A9.14 87   IV: 8608841-8608927
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk964278
gk964500
gk962765
gk962666
gk963722
gk963417
WBVar02124965
tm11249
WBVar02058072
WBVar02114903
WBVar02072437

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201761 8608841 8608927 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_8607841..8608840   1000 IV: 8607841-8608840 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in adr-1(tm668) and adr-1(gv6) comparing to in N2 at L4 larva stage. DESeq FDR <= 0.05 WBPaper00056617:adr-1_upregulated_L4_transcript
  Transcripts that showed significantly increased expression in adr-2(ok735) and adr-2(gv42) comparing to in N2 at L4 larva stage. DESeq FDR <= 0.05 WBPaper00056617:adr-2_upregulated_L4_transcript

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201761 8608841 8608927 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
87

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_8608928..8609233   306 IV: 8608928-8609233 Caenorhabditis elegans