Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:T01B11.10 | T01B11.10 |
1105
 |
IV: 8453296-8457035 |
Other
44 Allele
| Public Name |
|---|
| gk964278 |
| gk964500 |
| gk962765 |
| gk963722 |
| gk963417 |
| WBVar01730149 |
| WBVar01730150 |
| WBVar02046047 |
| WBVar01854165 |
| WBVar01688027 |
| WBVar01854164 |
| WBVar01854163 |
| WBVar02114900 |
| WBVar01453356 |
| WBVar01453358 |
| WBVar01453357 |
| WBVar00270683 |
| gk536358 |
| gk644838 |
| gk569436 |
| gk207271 |
| gk925372 |
| gk207272 |
| gk207269 |
| gk207270 |
| gk509736 |
| gk207268 |
| gk335169 |
| gk466698 |
| gk698701 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00219723 | 8453296 | 8457035 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_8457036..8457279 | 244 | IV: 8457036-8457279 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals. | Fold change > 2, FDR < 0.01. | WBPaper00065993:glp-1(e2141)_upregulated | |
| Transcripts that showed significantly increased expression in cco-1(RNAi) comparing to in vector control animals. | The limma package47 was used for differential expression. Genes with a Benjamini-Hochberg adjusted P-value <0.05 and an absolute log fold change of 2 were considered differentially expressed. | WBPaper00053402:cco-1(RNAi)_upregulated | |
| Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. | Student's t-test, fold change > 2, p-value < 0.05. | WBPaper00055386:daf-2(e1370)_downregulated | |
| Transcripts that showed significantly altered expression at AFD neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. | RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. | WBPaper00061902:camt-1(ok515)_regulated_AFD | |
| Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates. | DESeq2, p-value < 0.05, fold change > 2. | WBPaper00061357:mett-10(ok2204)_upregulated_OP50 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_8451760..8453295 | 1536 | IV: 8451760-8453295 | Caenorhabditis elegans |
