WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42D4.8.1 Sequence Name  C42D4.8.1
Length (nt)  4387   Chromosome Location  IV: 7160135-7165748
Chromosome . Primary Identifier  IV Chromosome Location . Start  7160135
Chromosome Location . End  7165748 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42D4.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004411 rpc-1 C42D4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42D4.8 C42D4.8 4203   IV: 7160285-7160428

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42D4.8.1 7160135 7165748 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129483   294   IV: 7160135-7160428 Caenorhabditis elegans
Exon129484   689   IV: 7160546-7161234 Caenorhabditis elegans
Exon129485   207   IV: 7161620-7161826 Caenorhabditis elegans
Exon129486   134   IV: 7161876-7162009 Caenorhabditis elegans
Exon129487   883   IV: 7162069-7162951 Caenorhabditis elegans
Exon129488   609   IV: 7162998-7163606 Caenorhabditis elegans
Exon129489   607   IV: 7163654-7164260 Caenorhabditis elegans
Exon129490   246   IV: 7164543-7164788 Caenorhabditis elegans
Exon129491   191   IV: 7164834-7165024 Caenorhabditis elegans
Exon129492   160   IV: 7165068-7165227 Caenorhabditis elegans
Exon129493   150   IV: 7165274-7165423 Caenorhabditis elegans
Exon129494   139   IV: 7165470-7165608 Caenorhabditis elegans
Exon129495   78   IV: 7165671-7165748 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42D4.8.1 7160135 7165748 -1

1 Sequence

Length
4387

1 Sequence Ontology Term

Identifier Name Description
transcript