WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00006116 Gene Name  str-51
Sequence Name  ? C34D4.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 and sir-2.1 based on microarray studies. Is affected by resveratrol based on microarray studies. Biotype  SO:0000336
Genetic Position  IV :3.29004 ±5.3e-05 Length (nt)  ? 1097
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00006116

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

17 Allele

Public Name
gk964500
gk963722
gk963417
gk963416
gk920890
gk346957
gk686245
gk852176
gk501626
gk897811
gk789084
gk204873
gk204871
gk204872
gk204870
WBVar01794785
WBVar01453006

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00006116 7126365 7127461 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_7127462..7127682   221 IV: 7127462-7127682 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. N.A. WBPaper00026929:Resveratrol_regulated_daf-16
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_5

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00006116 7126365 7127461 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1097

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_7125517..7126364   848 IV: 7125517-7126364 Caenorhabditis elegans