WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22D1.9.1 Sequence Name  T22D1.9.1
Length (nt)  3171   Chromosome Location  IV: 6906420-6909913
Chromosome . Primary Identifier  IV Chromosome Location . Start  6906420
Chromosome Location . End  6909913 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22D1.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004458 rpn-1 T22D1.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22D1.9 T22D1.9 2946   IV: 6906636-6906724

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T22D1.9.1 6906420 6909913 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128533   305   IV: 6906420-6906724 Caenorhabditis elegans
Exon128534   142   IV: 6906774-6906915 Caenorhabditis elegans
Exon128535   111   IV: 6906961-6907071 Caenorhabditis elegans
Exon128536   840   IV: 6907118-6907957 Caenorhabditis elegans
Exon128537   940   IV: 6908033-6908972 Caenorhabditis elegans
Exon128538   725   IV: 6909020-6909744 Caenorhabditis elegans
Exon128539   108   IV: 6909806-6909913 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T22D1.9.1 6906420 6909913 -1

1 Sequence

Length
3171

1 Sequence Ontology Term

Identifier Name Description
transcript