WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00236785 Gene Name  Y73B6A.16
Sequence Name  ? Y73B6A.16 Organism  Caenorhabditis elegans
Automated Description  Enriched in RIR; excretory gland cell; phasmid neurons; spermathecal-uterine junction; and uterine-vulval cell based on single-cell RNA-seq studies. Is affected by adr-1; fzo-1; and camt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 198
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Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00236785

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y73B6A.16 Y73B6A.16 198   IV: 6731973-6732170
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00077953
WBRNAi00021424
WBRNAi00007642

6 Allele

Public Name
gk964500
gk963722
gk963417
gk963416
gk964489
WBVar02124416

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00236785 6731973 6732170 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_6732171..6732979   809 IV: 6732171-6732979 Caenorhabditis elegans

10 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly altered expression at URX, AQR, and PQR neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
  Transcripts that showed significantly increased expression in zcIs13; twnEx320[Punc-119-ds-fzo-1] comparing to in zcIs13[Phsp-6-gfp] animals. Fold change >= 1.5. WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated
  Transcripts that showed significantly decreased expression in 10-days post L4 adult hermaphrodite N2 grown at 20C, comparing to in 1-day post L4 adult hermaphrodite N2 animals grown at 20C. CuffDiff, fold change > 2. WBPaper00065096:Day10_vs_Day1_downregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated
  Single-cell RNA-Seq cell group 142_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:142_0
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated
  Single-cell RNA-Seq cell group 146_0 expressed in epithelium. scVI 0.6.0 WBPaper00065841:146_0
  Single-cell RNA-Seq cell group 11_2 expressed in epithelium. scVI 0.6.0 WBPaper00065841:11_2
  Single-cell RNA-Seq cell group 47_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:47_0
  Single-cell RNA-Seq cell group 89_0 expressed in gland. scVI 0.6.0 WBPaper00065841:89_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00236785 6731973 6732170 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
198

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_6707053..6731972   24920 IV: 6707053-6731972 Caenorhabditis elegans