WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219791 Gene Name  C01B10.48
Sequence Name  ? C01B10.48 Organism  Caenorhabditis elegans
Automated Description  Is affected by cep-1 and daf-3 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 238
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219791

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C01B10.48 C01B10.48 238   IV: 6645512-6645749
 

Other

0 CDSs

0 RNAi Result

14 Allele

Public Name
gk964500
gk963722
gk963417
gk963416
WBVar02122601
WBVar02124592
WBVar00190154
WBVar01729499
gk611744
WBVar01452882
WBVar01729497
WBVar01729498
WBVar01729495
WBVar01729496

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219791 6645512 6645749 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_6645201..6645511   311 IV: 6645201-6645511 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Transcripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in daf-1(m40) at 1-day post L4 adult hermaphrodite animals. CuffDiff fold change >= 2, q < 0.05. WBPaper00059421:daf-3(mgDf90)_downregulated
Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. Transcripts that showed significantly increased expression in N2 animals infected by bacteria strain Vibrio cholerae A1552. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:V.cholerae_upregulated_N2
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219791 6645512 6645749 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
238

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_6645750..6645867   118 IV: 6645750-6645867 Caenorhabditis elegans