WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00255582 Gene Name  mir-8201
Sequence Name  ? Y73B6BL.290 Organism  Caenorhabditis elegans
Automated Description  Is affected by alg-2; ogt-1; and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  :± Length (nt)  ? 57
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00255582

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y73B6BL.290a Y73B6BL.290a 22   IV: 6294579-6294600
Transcript:Y73B6BL.290b Y73B6BL.290b 22   IV: 6294614-6294635
 

Other

0 CDSs

2 RNAi Result

WormBase ID
WBRNAi00058346
WBRNAi00027720

4 Allele

Public Name
gk964500
gk963722
gk963417
gk963416

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00255582 6294579 6294635 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  MicroRNAs that showed significantly decreased expression in alg-2(ok3034) comparing to in N2 day 5 adults. MiRNAs were called significantly misregulated if they exhibited an absolute mean log2foldchange greater than 1.5 and a padj less than 0.05 in mutant versus wildtype samples. WBPaper00066207:alg-2(ok3034)_downregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00255582 6294579 6294635 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
57

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region