WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219747 Gene Name  linc-79
Sequence Name  ? Y9C9A.110 Organism  Caenorhabditis elegans
Automated Description  Enriched in AIAL; AIYL; AIYR; and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by dpy-21 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  IV :1.39448± Length (nt)  ? 370
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219747

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y9C9A.110 Y9C9A.110 370   IV: 4975715-4976084
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00021552

10 Allele

Public Name
gk964500
gk963722
gk963867
gk963150
gk963980
gk621421
gk782456
gk427469
WBVar01630814
WBVar01953878

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219747 4975715 4976084 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated
  Single-cell RNA-Seq cell group 112_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:112_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219747 4975715 4976084 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
370

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region