WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219684 Gene Name  linc-26
Sequence Name  ? F30B5.10 Organism  Caenorhabditis elegans
Automated Description  Enriched in VC4 and VC5 based on single-cell RNA-seq studies. Is affected by swsn-1 based on RNA-seq studies. Is affected by Tamoxifen based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  IV :0.001164± Length (nt)  ? 236
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219684

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F30B5.10 F30B5.10 157   IV: 4238173-4238408
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk963722
gk963908
gk963959
tm11363
gk963960
tm10771
WBVar00188549
gk199697
WBVar01515405

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219684 4238173 4238408 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4236711..4238172   1462 IV: 4236711-4238172 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in swsn-1(os22ts) comparing to in N2 animals at young adult worms. DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.) WBPaper00060764:swsn-1(os22ts)_upregulated
  Transcripts that showed significantly decreased expression in animals exposed to 400uM tamoxifen from L1 to L4 larva stage. DEseq2, fold change > 2 WBPaper00064505:tamoxifen_downregulated
  Transcripts enriched in VC4_5 according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00066550:VC4_5_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219684 4238173 4238408 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
236

1 Sequence Ontology Term

Identifier Name Description
gene  

1 Strains

WormBase ID
WBStrain00055038

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4238409..4238875   467 IV: 4238409-4238875 Caenorhabditis elegans