WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00044093 Gene Name  srbc-72
Sequence Name  ? F30B5.9 Organism  Caenorhabditis elegans
Automated Description  Enriched in ASKL based on single-cell RNA-seq studies. Is affected by tatn-1 and clk-1 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  IV :-0.121473 ±0.016156 Length (nt)  ? 958
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00044093

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

32 Allele

Public Name
gk963722
gk963908
gk963959
WBVar01568691
WBVar01568690
WBVar01568689
WBVar01794621
WBVar01568688
WBVar01568687
WBVar01568686
WBVar01568685
WBVar01568684
WBVar01568697
WBVar01568696
WBVar01568695
WBVar01568694
WBVar01568693
WBVar01568692
WBVar01649698
WBVar01568683
gk421928
WBVar01568682
ttTi46305
WBVar01568681
WBVar01568680
WBVar01568679
gk805301
gk199655
gk199656
WBVar00188521

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00044093 4222183 4223140 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4220084..4222182   2099 IV: 4220084-4222182 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
  Genes identified as up-regulated at a 5% false discovery rate through RNAseq experiments with three tatn-1(qd182) and three N2 RNA samples. ANOVA with FDR <= 0.05. WBPaper00044656:tatn-1(qd182)_upregulated
  Single-cell RNA-Seq cell group 63_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:63_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00044093 4222183 4223140 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
958

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4223141..4223835   695 IV: 4223141-4223835 Caenorhabditis elegans