WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235370 Gene Name  K08D10.15
Sequence Name  ? K08D10.15 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including hrde-2; pptr-1; and sir-2.1 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 508
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00235370

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

26 Allele

Public Name
gk963722
gk963908
WBVar02124199
WBVar02123244
WBVar02124013
WBVar02120501
WBVar02121023
WBVar02122954
WBVar02121616
WBVar02123921
WBVar02124114
WBVar02122391
WBVar02124696
WBVar02122139
tm11365
WBVar02121771
WBVar02124588
WBVar02124356
WBVar02121995
WBVar02124964
WBVar02121202
WBVar02122245
WBVar02122593
WBVar01515384
gk588066
gk932131

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00235370 4186113 4186620 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4186621..4188672   2052 IV: 4186621-4188672 Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 35C for 1 hour. Transcripts that showed significantly increased expression immediately after 1-day post L4 adult hermaphrodite N2 animals were exposed to 35C for 1 hour. The DESeq2 (GalaxyVersion 2.11.40.6 + galaxy1) was used to determine differentiallyexpressed features from count tables of differential transcript abundances. log2FC > 1, FDR < 0.01. WBPaper00065749:Heat-Shock_upregulated_N2
  Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:eat-2(ad1116)_downregulated
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Transcripts that showed significantly increased expression by somatic RAGA-1 degradation. DESeq2_1.34.0, FDR < 0.01, fold change > 2. WBPaper00066005:RAGA-1_degradation_somatic_upregulated
  Targets of endo-siRNA that showed significantly increased expression in BFF39[pptr-1(tm3103);Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] comparing to in SX1263[Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] dissected gonad isolated from 1-day old adult hermaphrodites. DESeq2, fold change > 2, FDR < 0.01 WBPaper00057140:pptr-1(tm3103)_upregulated
  Transcripts that showed significantly increased expression in hrde-2(qe20) comparing to in N2. Fold change > 2, FDR < 0.05. WBPaper00066448:hrde-2(qe20)_upregulated
  Transcripts that showed significantly increased expression in hrde-2(tm1200) comparing to in N2. Fold change > 2, FDR < 0.05. WBPaper00066448:hrde-2(tm1200)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00235370 4186113 4186620 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
508

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region