WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00271791 Gene Name  W03D2.15
Sequence Name  ? W03D2.15 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including inx-14; ilc-17.1; and hda-2 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 729
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00271791

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W03D2.15 W03D2.15 729   IV: 4071094-4071822
 

Other

0 CDSs

0 RNAi Result

32 Allele

Public Name
gk963722
gk963908
WBVar02069798
WBVar02020492
WBVar02020491
WBVar00572074
WBVar00572075
WBVar01727349
WBVar01727348
WBVar01727354
WBVar01727355
WBVar01727352
WBVar01727353
WBVar01727350
WBVar01727351
gk361042
gk787263
WBVar01997213
gk724391
gk326775
gk738619
gk405471
gk462874
gk717964
gk717963
gk717962
WBVar01452048
WBVar01452047
WBVar01649663
WBVar01452044

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00271791 4071094 4071822 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4071823..4072326   504 IV: 4071823-4072326 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly decreased expression in animals with germline-specific inx-14(RNAi) comparing to in aniamls fed with control vector, both exposed to PA14 infection. DESeq2. Differentially-expressed genes (DEG) were identified based on two criteria: FDR (False discovery rateusing Benjamini-Hochberg adjusted p-values) < 0.01 and absolute value of log2(Fold Change) > 1. WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
  Transcripts that showed significantly decreased expression in hda-2(ok1479) comparing to in N2 animals. DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. WBPaper00062159:hda-2(ok1479)_downregulated
  Transcripts that showed significantly decreased expression in mab-5(e1751) without infection comparing to in N2 animals without infection. DESeq2, (FDR)-adjusted P-value < 0.05 and fold change >= 2. WBPaper00066587:mab-5(e1751)_downregulated_uninfected
Bacteria infection: Staphylococcus epidermidis Transcripts that showed significantly decreased expression in mab-5(e1239) animals exposed to S. epidermidis for 24 hours since L4 larva stage, comparing to uninfected mab-5(e1239) animals. DESeq2, (FDR)-adjusted P-value < 0.05 and fold change >= 2. WBPaper00066587:S.epidermidis_downregulated_mab-5(e1239)
  Transcripts that showed significantly increased expression in shk-1(yum1003) comparing to in N2 animals. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:shk-1(yum1003)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00271791 4071094 4071822 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
729

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4069549..4071093   1545 IV: 4069549-4071093 Caenorhabditis elegans