WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219741 Gene Name  linc-77
Sequence Name  ? W03D2.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including swsn-1; csr-1; and ints-4 based on microarray and RNA-seq studies. Biotype  SO:0001641
Genetic Position  IV :-0.87383± Length (nt)  ? 1793
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219741

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W03D2.12 W03D2.12 1749   IV: 4059931-4061723
 

Other

0 CDSs

0 RNAi Result

63 Allele

Public Name
gk963722
gk963908
gk688540
gk843447
gk504274
WBVar01649648
gk587436
WBVar01649649
gk199365
WBVar01452028
gk430053
WBVar01581064
gk199366
WBVar01452027
WBVar01581063
gk793525
WBVar01581062
gk199363
gk862682
WBVar01581061
gk199364
WBVar01997209
WBVar02094351
WBVar02094350
WBVar02089998
WBVar01452024
WBVar01452026
WBVar01452025
gk456005
WBVar01910818

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219741 4059931 4061723 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4058244..4059930   1687 IV: 4058244-4059930 Caenorhabditis elegans

10 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts detected in germline isolated from day-1 adult hermaphrodite animals. All three experiments have CPM >= 1. WBPaper00067147:germline_expressed
  Transcripts that showed significantly increased expression in rict-1(mg360) comparing to in N2 at day 1 adult stage. DESeq2, FDR < 0.01, fold change > 2. WBPaper00066970:rict-1(mg360)_upregulated
  Transcripts that showed significantly increased expression in ints-1(RNAi) animals comparing to control RNAi animals, at late L3 larva stage. DESeq2, v1.12.0, fold change > 2, FDR < 0.05 WBPaper00057068:ints-4(RNAi)_upregulated
  Transcripts that showed significantly decreased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals. Fold change > 2, FDR < 0.01. WBPaper00065993:glp-1(e2141)_downregulated
  Transcripts that showed significantly increased expression in csr-1(RNAi) comparing to in N2 animals fed wth empty vector. DESeq2 v1.20.0,, fold change > 2, FDR < 0.05. WBPaper00066919:csr-1(RNAi)_upregulated
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts that showed significantly decreased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_downregulated
  Transcripts that showed significantly decreased expression in exos-8(RNAi) animals. fold change > 2, FDR < 0.05 WBPaper00068292:exos-8(RNAi)_downregulated
  Transcripts that showed significantly increased expression in day 8 oocytes isolated from daf-2(e1370);control versus daf-2(e1370);bcat-1(RNAi)animals. DESeq2, fold change > 2, FDR < 0.05 WBPaper00066547:bcat-1(RNAi)_downregulated_transcript
  Transcripts that showed significantly decreased expression in swsn-1(os22ts) comparing to in N2 animals at young adult worms. DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.) WBPaper00060764:swsn-1(os22ts)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219741 4059931 4061723 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1793

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region