WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196154 Gene Name  F28F9.8
Sequence Name  ? F28F9.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by spr-5 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 266
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196154

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F28F9.8 F28F9.8 266   IV: 3852722-3852987
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk963722
gk963908
gk525243
gk945955
gk956152
gk563593
gk198877

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196154 3852722 3852987 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3852336..3852721   386 IV: 3852336-3852721 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Transcripts that showed significantly increased expression in spr-5(by101) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:spr-5(by101)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196154 3852722 3852987 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
266

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3852988..3854897   1910 IV: 3852988-3854897 Caenorhabditis elegans