WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200814 Gene Name  F28F9.14
Sequence Name  ? F28F9.14 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Is affected by alh-4 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 149
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200814

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F28F9.14 F28F9.14 149   IV: 3846077-3846225
 

Other

0 CDSs

0 RNAi Result

3 Allele

Public Name
gk963722
gk963908
gk198863

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00200814 3846077 3846225 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3846226..3848972   2747 IV: 3846226-3848972 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in alh-4(hj221) deletion allele comparing to in N2. N.A. WBPaper00061653:alh-4(hj221)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00200814 3846077 3846225 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
149

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3841629..3846076   4448 IV: 3841629-3846076 Caenorhabditis elegans