WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235357 Gene Name  Y37E11B.16
Sequence Name  ? Y37E11B.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by pabp-2 based on RNA-seq studies. Biotype  SO:0002182
Genetic Position  :± Length (nt)  ? 727
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00235357

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y37E11B.16 Y37E11B.16 72   IV: 3578889-3579615
 

Other

0 CDSs

0 RNAi Result

16 Allele

Public Name
gk963722
tm10723
WBVar00187580
gk798115
gk742880
gk344103
gk521088
WBVar00571441
WBVar01668490
WBVar01668491
WBVar01514990
WBVar01514988
WBVar01514987
WBVar01514989
WBVar01514986
WBVar01630371

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00235357 3578889 3579615 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed signifcantly increased expression in pabp-2(RNAi) animals comparing to in N2 animals injected with empty vector at L1 larva stage and collected at L4 larva stage. FDR < 0.05, fold change > 2 WBPaper00067368:pabp-2(RNAi)_upregulated_N2
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts that showed significantly decreased expression in day 3 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals. Fold change > 2, FDR < 0.05 WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00235357 3578889 3579615 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
727

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3579616..3579620   5 IV: 3579616-3579620 Caenorhabditis elegans