WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219706 Gene Name  linc-158
Sequence Name  ? F58E2.12 Organism  Caenorhabditis elegans
Automated Description  Enriched in AWAL and AWCL based on single-cell RNA-seq studies. Is affected by daf-2; nfki-1; and ogt-1 based on microarray and RNA-seq studies. Biotype  SO:0001641
Genetic Position  IV :-3.98887± Length (nt)  ? 366
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219706

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F58E2.12 F58E2.12 315   IV: 3450370-3450735
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963722
WBVar02122390
WBVar02123806
WBVar01965869
gk735856
gk863384

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219706 3450370 3450735 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3448709..3450369   1661 IV: 3448709-3450369 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts that showed significantly decreased expression in nfki-1(cer1) animals at L1 larva stage, comparing to in N2 animals. Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01. WBPaper00060445:nfki-1(cer1)_downregulated_L1
  Single-cell RNA-Seq cell group 35_3 expressed in neuron. scVI 0.6.0 WBPaper00065841:35_3
  Single-cell RNA-Seq cell group 106_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:106_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219706 3450370 3450735 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
366

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3450736..3450890   155 IV: 3450736-3450890 Caenorhabditis elegans