WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00003363 Gene Name  mir-270
Sequence Name  ? T26C12.5 Brief Description  mir-270 encodes a microRNA, a small non-protein coding RNA; many of the known microRNAs are involved in post- transcriptional regulation of genes; the precise function of miR-270 is unknown.
Organism  Caenorhabditis elegans Automated Description  Is affected by dpy-21 and hsf-1 based on RNA-seq studies.
Biotype  SO:0001265 Genetic Position  IV :-5.10234 ±0.076421
Length (nt)  ? 95
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00003363

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T26C12.5b T26C12.5b 20   IV: 3258467-3258486
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963722
gk962726
gk963907
tm11092
tm11350
n4595

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00003363 3258455 3258549 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3254825..3258454   3630 IV: 3254825-3258454 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in uthIs235 [sur-5p-hsf-1-unc-54 3'UTR + myo-2p-tdTomato-unc-54 3' UTR] comparing to in N2. DESeq2 FDR < 0.05, fold change > 2. WBPaper00067474:HSF-1(OverExpress)_upregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated
  Transcripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr8443 Expression detected from L1 to adults in the intestine and a couple of head neurons. Mosaic expression.  
    Expr10976    

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00003363 3258455 3258549 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
95

1 Sequence Ontology Term

Identifier Name Description
gene  

1 Strains

WormBase ID
WBStrain00027492

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3258550..3258909   360 IV: 3258550-3258909 Caenorhabditis elegans