WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00220180 Gene Name  Y54G2A.74
Sequence Name  ? Y54G2A.74 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including etr-1; cep-1; and ubr-5 based on RNA-seq studies. Is affected by metformin based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 127
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00220180

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54G2A.74 Y54G2A.74 127   IV: 2839121-2839247
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00057472

4 Allele

Public Name
gk963722
gk962726
gk962987
WBVar01451477

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00220180 2839121 2839247 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed signifcantly increased expression in pabp-2(RNAi) animals comparing to in N2 animals injected with empty vector at L1 larva stage and collected at L4 larva stage. FDR < 0.05, fold change > 2 WBPaper00067368:pabp-2(RNAi)_upregulated_N2
  Transcripts that showed signifcantly decreased expression in ubr-5(miy31);pabp-2(RNAi) comparing to in pabp-2(RNAi) animals. FDR < 0.05, fold change > 2 WBPaper00067368:ubr-5(miy31)_downregulated_pabp-2(RNAi)
  Transcripts that showed significantly decreased expression among worms grown on metformin-supplemented OP50 from L1 to day 2 adult stage, comparing to animals grown on OP50 lawns. DESeq2, FDR < 0.05, fold change > 2. WBPaper00057265:metaformin_downregulated_OP50
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_UV

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00220180 2839121 2839247 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
127

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region