WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.2a.1 Sequence Name  Y54G2A.2a.1
Length (nt)  1936   Chromosome Location  IV: 2788692-2796805
Chromosome . Primary Identifier  IV Chromosome Location . Start  2788692
Chromosome Location . End  2796805 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021868 atln-1 Y54G2A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.2a Y54G2A.2a 1722   IV: 2788701-2788898

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y54G2A.2a.1 2788692 2796805 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115758   207   IV: 2788692-2788898 Caenorhabditis elegans
Exon115759   109   IV: 2789757-2789865 Caenorhabditis elegans
Exon115761   143   IV: 2790492-2790634 Caenorhabditis elegans
Exon115763   105   IV: 2791624-2791728 Caenorhabditis elegans
Exon115765   201   IV: 2792269-2792469 Caenorhabditis elegans
Exon115767   139   IV: 2793348-2793486 Caenorhabditis elegans
Exon115770   150   IV: 2793757-2793906 Caenorhabditis elegans
Exon115773   266   IV: 2794478-2794743 Caenorhabditis elegans
Exon115776   240   IV: 2795654-2795893 Caenorhabditis elegans
Exon115783   376   IV: 2796430-2796805 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y54G2A.2a.1 2788692 2796805 1

1 Sequence

Length
1936

1 Sequence Ontology Term

Identifier Name Description
transcript