WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A5A.1b.1 Sequence Name  Y48A5A.1b.1
Length (nt)  1324   Chromosome Location  IV: 1965850-1969638
Chromosome . Primary Identifier  IV Chromosome Location . Start  1965850
Chromosome Location . End  1969638 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A5A.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021655 shq-1 Y48A5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A5A.1b Y48A5A.1b 1137   IV: 1965874-1965928

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y48A5A.1b.1 1965850 1969638 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

4 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114466   79   IV: 1965850-1965928 Caenorhabditis elegans
Exon114470   400   IV: 1966037-1966436 Caenorhabditis elegans
Exon114472   298   IV: 1967826-1968123 Caenorhabditis elegans
Exon114473   547   IV: 1969092-1969638 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y48A5A.1b.1 1965850 1969638 1

1 Sequence

Length
1324

1 Sequence Ontology Term

Identifier Name Description
transcript