WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A5A.1a.1 Sequence Name  Y48A5A.1a.1
Length (nt)  1471   Chromosome Location  IV: 1965481-1969650
Chromosome . Primary Identifier  IV Chromosome Location . Start  1965481
Chromosome Location . End  1969650 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A5A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021655 shq-1 Y48A5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A5A.1a Y48A5A.1a 1296   IV: 1965481-1965623

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y48A5A.1a.1 1965481 1969650 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114465   143   IV: 1965481-1965623 Caenorhabditis elegans
Exon114468   71   IV: 1965858-1965928 Caenorhabditis elegans
Exon114469   400   IV: 1966037-1966436 Caenorhabditis elegans
Exon114471   298   IV: 1967826-1968123 Caenorhabditis elegans
Exon114474   559   IV: 1969092-1969650 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y48A5A.1a.1 1965481 1969650 1

1 Sequence

Length
1471

1 Sequence Ontology Term

Identifier Name Description
transcript