Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y38C1BA.4.1 | Y38C1BA.4.1 |
120
 |
IV: 1821850-1822357 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y38C1BA.4 | Y38C1BA.4 |
120
|
IV: 1821850-1821912 |
19 Allele
| Public Name |
|---|
| gk963722 |
| WBVar00569231 |
| WBVar00569232 |
| WBVar00569233 |
| gk963025 |
| gk964255 |
| gk194889 |
| gk194890 |
| WBVar01511625 |
| gk194887 |
| gk194888 |
| gk769115 |
| WBVar01580007 |
| gk569919 |
| gk755510 |
| gk580047 |
| gk382061 |
| gk194891 |
| WBVar01687723 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00195012 | 1821850 | 1822357 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_1822358..1824480 | 2123 | IV: 1822358-1824480 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in mip-1(uae1) comparing to in N2. | DESeq2. Statistically significant genes were chosen based on a BenjaminiHochberg adjusted P-value of 0.05. | WBPaper00067885:mip-1(uae1)_downregulated | |
| Transcripts that showed significantly decreased expression in npp-14(ax4543) comparing to in N2. | DESeq2. Statistically significant genes were chosen based on a BenjaminiHochberg adjusted P-value of 0.05. | WBPaper00067885:npp-14(ax4543)_downregulated | |
| Transcripts that showed significantly decreased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector. | Differential expression was assessed using a Partial least-squares discriminant analysis (PLS-DA) using mixomics setting a variable of importance (VIP) score of greater than 1 as significant. | WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1159521 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_1820254..1821849 | 1596 | IV: 1820254-1821849 | Caenorhabditis elegans |
