WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41D4A.5.1 Sequence Name  Y41D4A.5.1
Length (nt)  2086   Chromosome Location  IV: 1727963-1737884
Chromosome . Primary Identifier  IV Chromosome Location . Start  1727963
Chromosome Location . End  1737884 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41D4A.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021507 ptpn-22 Y41D4A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41D4A.5 Y41D4A.5 1410   IV: 1731159-1731506

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y41D4A.5.1 1727963 1737884 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113994   655   IV: 1727963-1728617 Caenorhabditis elegans
Exon113996   350   IV: 1731157-1731506 Caenorhabditis elegans
Exon113998   511   IV: 1732962-1733472 Caenorhabditis elegans
Exon114001   139   IV: 1735816-1735954 Caenorhabditis elegans
Exon114004   109   IV: 1736678-1736786 Caenorhabditis elegans
Exon114007   176   IV: 1737471-1737646 Caenorhabditis elegans
Exon114010   79   IV: 1737692-1737770 Caenorhabditis elegans
Exon114013   67   IV: 1737818-1737884 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y41D4A.5.1 1727963 1737884 -1

1 Sequence

Length
2086

1 Sequence Ontology Term

Identifier Name Description
transcript