WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219437 Gene Name  C50A2.7
Sequence Name  ? C50A2.7 Organism  Caenorhabditis elegans
Automated Description  Enriched in AWBL and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by smn-1; cat-2; and csr-1 based on RNA-seq studies. Is predicted to encode a protein with the following domains: PAN-like domain and PAN-3 domain. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 1321
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219437

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C50A2.7.1 C50A2.7.1 429   IV: 1163426-1164746
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50A2.7 C50A2.7 429   IV: 1163426-1163539

0 RNAi Result

57 Allele

Public Name
gk963722
gk964482
gk963025
tm11413
gk193576
gk193575
gk193579
gk193578
gk193577
WBVar00183489
WBVar01831454
WBVar01831453
WBVar01825615
WBVar01825614
WBVar01686996
WBVar01686995
WBVar01920826
WBVar01920827
WBVar02103353
WBVar02103352
WBVar01510488
WBVar01510489
WBVar01510486
WBVar01510487
WBVar02019625
WBVar01510492
WBVar01510493
WBVar02019624
WBVar01510490
WBVar01510491

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219437 1163426 1164746 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_1164747..1170707   5961 IV: 1164747-1170707 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in smn-1(ok355) heterozygots using balancer hT2 comparing to in N2. DESeq v1.14.0, log2FC > 1, q <= 0.05. WBPaper00056809:smn-1(ok355)_upregulated
  Transcripts that showed significantly increased expression in csr-1(RNAi) comparing to in N2 animals fed wth empty vector. DESeq2 v1.20.0,, fold change > 2, FDR < 0.05. WBPaper00066919:csr-1(RNAi)_upregulated
  Transcripts that showed significantly decreased expression in Day 8 adults comparing to in Day 1 adults in neuron cells. t-test, fold change > 2, p-value < 0.01. WBPaper00062590:Aging_downregulated_neuron
  Single-cell RNA-Seq cell group 101_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:101_0
  Transcripts that showed significantly increased expression in cat-2(e1112);odIs77 comparing to in odIs77 control animals. EdgeR, FDR<0.01 WBPaper00060921:cat-2(e1112)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219437 1163426 1164746 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1321

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_1160487..1163425   2939 IV: 1160487-1163425 Caenorhabditis elegans