WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3AL.1f.1 Sequence Name  Y55F3AL.1f.1
Length (nt)  3558   Chromosome Location  IV: 972383-983709
Chromosome . Primary Identifier  IV Chromosome Location . Start  972383
Chromosome Location . End  983709 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3AL.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004047 plx-1 Y55F3AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3AL.1f Y55F3AL.1f 3558   IV: 972383-972922

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3AL.1f.1 972383 983709 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112727   540   IV: 972383-972922 Caenorhabditis elegans
Exon112733   151   IV: 973764-973914 Caenorhabditis elegans
Exon112739   172   IV: 974470-974641 Caenorhabditis elegans
Exon112745   126   IV: 975269-975394 Caenorhabditis elegans
Exon112751   150   IV: 975450-975599 Caenorhabditis elegans
Exon112757   460   IV: 976199-976658 Caenorhabditis elegans
Exon112763   510   IV: 977242-977751 Caenorhabditis elegans
Exon112769   354   IV: 978858-979211 Caenorhabditis elegans
Exon112775   159   IV: 980654-980812 Caenorhabditis elegans
Exon112781   434   IV: 981560-981993 Caenorhabditis elegans
Exon112787   388   IV: 982729-983116 Caenorhabditis elegans
Exon112791   114   IV: 983596-983709 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3AL.1f.1 972383 983709 1

1 Sequence

Length
3558

1 Sequence Ontology Term

Identifier Name Description
transcript